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HealthGrid conference 2010
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University Paris XI - Laboratoire de l'Accélérateur Linéaire
University Paris XI - Laboratoire de l'Accélérateur Linéaire
Description
The HealthGrid conference takes place every year since 2003. Its aim is to gather all actors and players in the fiekd of healthgrid technologies and applications.
In 2010, the conference will take place on the campus of Paris XI university in Orsay. Best french university in physics and mathematics according to the 2009 Shanghai Academic Ranking of World Universities, Paris XI university hosts leading laboratories in many fields of reseach on the largest university campus in France at the heart of the french silicon valley South West of Paris.
The conference will take place at the Laboratoire de l'Accélérateur Linéaire (LAL), one of the largest laboratories of CNRS Institute of Nuclear and Particle Physics and home of its Institut des Grilles.
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10:30
Welcome coffee - registration
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Conference opening: Opening speeches¶Président de session: Tony Solomonides (University of West England)
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Conference opening: Presentation of CNRS Institut des Grilles by Vincent Breton¶Président de session: Tony Solomonides (university of west England)
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Conference opening: Perspective from the European Commission by Kyriakos Baxevanidis¶Président de session: tony solomonides (university of west England)
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13:30
Lunch break Blue room
Blue room
University Paris XI - Laboratoire de l'Accélérateur Linéaire
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Workshop: Life Science Virtual Research Community¶
This session is dedicated to a full afternoon workshop.
This workshop, organized by the HealthGrid association, intends to be a discussion forum on the future of the Life-Science grid community in Europe. It will consists of brief position presentations from representative of users and infrastructure providers of the field, followed by an open discussion. The workshop proposes to gather opinions and positions on the future of the LS community, related, but not limited to the following questions:
• Do we need a European structure for grid-related Health and LS communities ?
• What would be its role ?
• Who would be the targeted user communities ?
• What would be the supporting infrastructures ?
• How would it be organized and how would it interact with the existing initiatives ?Président de session: Dr Tristan Glatard (CNRS)-
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Introduction, goal of the workshop¶
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NHRF, Greece¶Aristotelis Chatziioannou ”Enabling distributed Processing and Management of Biological Data through fusion of Grid and Web Technologies"Orateur: Dr Aristotelis Chatziioannou (National Hellenic Research Foundation Greece)
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Swiss Grid community (Swiss National Grid Association (SwiNG), and Swiss Institute of Bioinformatics)¶Life Science Grid Applications in Switzerland – Position TalkOrateur: Dr Heinz Stockinger (Swiss Institute of Bioinformatics)
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German user group(s) (TBC)¶Orateur: Dr Dagmar Krefting (Charité - Universitätsmedizin Berlin Germany)
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Dutch user community and NGI¶Orateur: Dr Silvia Delgado Olabarriaga (University of Amsterdam)
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Spanish user community¶Orateur: Dr Ignacio Blanquer (Universidad Politécnica de Valencia, Spain)
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16:30
Coffee break
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eNMR EU project¶Alexandre Bonvin, “WeNMR: A worldwide e-Infrastructure for NMR and structural biology”Orateur: Dr Marco Verlato (INFN)
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Discussion¶
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HealthGrid General Assembly¶
The annual general assembly of the HealthGrid association will take place at the end of the first conference day. It is the opportunity to have an overview of the association activites to promote the use of grids in life sciences and healthcare.
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10:30
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Applications: Keynote speech by Joan Dzenowagis¶Président de session: Jonathan Silverstein (University of Chicago)
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Applications: Oral contributions selected through call for papers¶Président de session: Dr Jonathan Silverstein (University of Chicago)
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Grid-based International Network for Flu Observation (g-INFO)¶Orateur: M. Trung Tung Doan (HPC Center - Hanoi University of Technology)
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Grid based Evaluation of a Liver Segmentation Method for Contrast Enhanced Abdominal MRI¶Orateur: Mlle Dagmar Krefting (Charité - Universitätsmedizin Berlin)
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11:30
break
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Applications: Oral contributions selected through call for papers¶Président de session: Jonathan silverstein (university of Chicago)
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Visualization, Analysis, and Design of COMBO-FISH Probes in the Grid-Based GLOBE 3D Genome Platform¶Orateur: Dr Nick KEPPER (BioQuant, Universität Heidelberg)
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Grid Heterogeneity in In-silico Experiments: An Exploration of Drug Screening Using DOCK on Cloud Environments¶Orateur: Dr Wen-wai Yim (University of California, San Diego)
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CHOIS: Enabling grid technologies for obesity surveillance and control¶Orateur: Dr Arun DATTA (National University USA)
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Mean-Shift scale parameters optimization on the EGEE grid¶Orateurs: Mlle Li Ting (CREATIS), Dr tristan glatard (university of lyon ; creatis-lrmn)
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13:30
Lunch break
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Core technologies and data integration: Oral contributions selected through call for papers¶Président de session: M. Yannick Legre (maat France - HealthGrid association)
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Web service catalogue for Biomedical GRID infrastructure¶Orateur: Max García (University of Málaga Spain)
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Phylogenetic Code in the Cloud – Can it Meet the Expectations?¶Orateur: Dr Heinz Stockinger (Swiss Institute of Bioinformatics)
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Integrating TRENCADIS Components in gLite to Share DICOM Medical Images and Structured Reports¶Orateur: Dr Ignacio Blanquer (Universidad Politécnica de Valencia, Spain)
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Research Traceability using Provenance Services for Biomedical Analysis¶Orateur: Dr Peter Bloodsworth (UWE, Bristol UK)
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16:30
break
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Core technologies and data integration: Oral contributions selected through call for papers¶Président de session: M. Yannick Legre (Maat France - HealthGrid association)
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Short oral presentation of posters¶
This session is dedicated to a short 3 minutes presentation of each of the posters
Président de session: Dr vincent breton (CNRS-IN2P3) -
Gala Dinner¶
A Gala Dinner will be held in the Restaurant RELAIS DES CHARTREUX located in SAULX LES CHARTREUX City.
A bus will pick up the dinner participants in front of the conference venue at 7 pm. For the return trip around 11pm, two bus stops: 1) RER B Station "Orsay-Ville" and 2) Montparnasse train station
Address:
RUE DE LA CERISAIE (RN 20)
F - 91160 SAULX LES CHARTREUX
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Keynote speech by Modesto Orozco: the computational nature of the biological problem¶Président de session: Dr Johan Montagnat (CNRS)
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Accessibility and socio-economic aspects: Oral contributions selected through call for papers¶Président de session: Dr Johan Montagnat (CNRS)
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11:30
Coffee break
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Accessibility and socio-economic aspects: Oral contributions selected through call for papers¶
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Privacy aware access controls for medical data disclosure on European HealthGrids¶Orateur: Dr Tony Solomonides (UWE, Bristol UK)
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On Transferring the Grid Technology to the Biomedical Community¶Orateur: M. Yassene Mohammed (University of Hannover/Germany and AMC/Netherland)
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Décrypthon Grid - Grid Resources Dedicated to Neuromuscular Disorders¶Orateur: Nicolas BARD (CNRS)
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Hitting the Ground Running: Healthgrid deployment and adoption¶Orateur: Dr Silvia Olabarriaga (AMC Netherlands)
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13:30
Lunch break
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Future of grids: Special session on General Purpose Graphical Processors¶Présidents de session: Prof. David Hill (Blaise Pascal University), Prof. Vicente Hernandez (Universidad Politecnica de Valencia)
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Using Graphics Processors to Accelerate Protein Docking Calculations¶Orateur: David RITCHIE (INRIA Nancy - Grand Est France)
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Putting a Heart into a Box: GPGPU simulation of a Cardiac Model on the XBox 360¶When they first hit the market the current “next” generation of games consoles are, pretty much by definition, the most powerful “bangs per buck” computing hardware one can get, especially in terms of their graphical computing power and advanced GPUs. However, little work has been published which actually uses this power to produce useful research results. One exception is my recent paper using the XBox 360 to carry out electro-cardio dynamics simulations, recently published in the Computational Biology and Chemistry*. This I shall discuss in the broader context of using games consoles as an alternative HPC resource. I shall also discuss the wider publicity generated by this paper, and highlight how games could be a very powerful tool in the Public Engagement with Science arena. * Implications of the Turing Completeness of Reaction-Diffusion Models, informed by GPGPU simulations on an XBox 360: Cardiac Arrhythmias, Re-entry and the Halting Problem, S.Scarle, Computational Biology and Chemistry 33 253 (2009) Video presentation at: http://tinyurl.com/cpv3pcOrateur: Dr Simon Scarle (University of Warwick)
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Conference closure: Keynote speech by Fabrizio Gagliardi: Cloud computing for research¶Président de session: Prof. Vicente Hernandez (universidad Politecnica de Valencia)
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Conference closure: Conclusions¶Président de session: Prof. vicente hernandez (universidad Politecnica de Valencia)
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17:00
Coffee farewell
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