HealthGrid conference 2010

28 juin 2010, 08:00 → 2 juil. 2010, 18:00 Europe/Paris

University Paris XI - Laboratoire de l'Accélérateur Linéaire

The HealthGrid conference takes place every year since 2003. Its aim is to gather all actors and players in the fiekd of healthgrid technologies and applications. In 2010, the conference will take place on the campus of Paris XI university in Orsay. Best french university in physics and mathematics according to the 2009 Shanghai Academic Ranking of World Universities, Paris XI university hosts leading laboratories in many fields of reseach on the largest university campus in France at the heart of the french silicon valley South West of Paris. The conference will take place at the Laboratoire de l'Accélérateur Linéaire (LAL), one of the largest laboratories of CNRS Institute of Nuclear and Particle Physics and home of its Institut des Grilles.

lundi 28 juin

10:30 → 11:30 Welcome coffee - registration

11:30 → 12:00 Conference opening: Opening speeches

Président de session: Tony Solomonides (University of West England)

slides Institut_des_Grilles_HealthGrid_2010_VincentBreton.pdf

12:00 → 12:45 Conference opening: Presentation of CNRS Institut des Grilles by Vincent Breton

Président de session: Tony Solomonides (university of west England)

slides Institut_des_Grilles_HealthGrid_2010_VincentBreton.pdf

12:45 → 13:30 Conference opening: Perspective from the European Commission by Kyriakos Baxevanidis

Président de session: tony solomonides (university of west England)

slides Institut_des_Grilles_HealthGrid_2010_VincentBreton.pdf

13:30 → 15:00 Lunch break

15:00 → 18:30 Workshop: Life Science Virtual Research Community

This session is dedicated to a full afternoon workshop.
This workshop, organized by the HealthGrid association, intends to be a discussion forum on the future of the Life-Science grid community in Europe. It will consists of brief position presentations from representative of users and infrastructure providers of the field, followed by an open discussion. The workshop proposes to gather opinions and positions on the future of the LS community, related, but not limited to the following questions:
• Do we need a European structure for grid-related Health and LS communities ?
• What would be its role ?
• Who would be the targeted user communities ?
• What would be the supporting infrastructures ?
• How would it be organized and how would it interact with the existing initiatives ?

Président de session: Dr Tristan Glatard (CNRS)

15:00 Introduction, goal of the workshop

Slides Introduction_GoalofTheWorkshop_TristanGlatard.pdf

15:10 Finnish NGI / Nordic use community

Orateur: Dr Antti Pursula (CSC, Finland)

Slides FinnishNGI_NordicUseCommunity_AnttiPURSULA.pdf

15:20 NHRF, Greece

Aristotelis Chatziioannou ”Enabling distributed Processing and Management of Biological Data through fusion of Grid and Web Technologies"

Orateur: Dr Aristotelis Chatziioannou (National Hellenic Research Foundation Greece)

Slides NRHF_Greece_AristotelisCHATZIIOANNOU.pdf

15:30 Swiss Grid community (Swiss National Grid Association (SwiNG), and Swiss Institute of Bioinformatics)

Life Science Grid Applications in Switzerland – Position Talk

Orateur: Dr Heinz Stockinger (Swiss Institute of Bioinformatics)

Slides Swiss_HeinzSTOCKINGER.pdf

15:40 German user group(s) (TBC)

Orateur: Dr Dagmar Krefting (Charité - Universitätsmedizin Berlin Germany)

Slides GermanHealthGridActivities_DagmarKREFTING.pdf

15:50 Dutch user community and NGI

Orateur: Dr Silvia Delgado Olabarriaga (University of Amsterdam)

Slides DutchNGI_SilviaOLABARIAGA.pdf

16:00 Spanish user community

Orateur: Dr Ignacio Blanquer (Universidad Politécnica de Valencia, Spain)

Slides Spain_IgnacioBLANQUER.pdf

16:10 Italian Life-Sciences initiative

Orateur: Dr Marco VERLATO (INFN)

Slides Italy_MarcoVERLATO.pdf

16:20 French user community

Orateur: Dr Johan Montagnat (CNRS)

Slides France_JohanMONTAGNAT.pdf

16:30 Coffee break

16:45 FKPPL and Rhône-Alpes Virtual Organizations

Orateur: M. Yonny CARDENAS (CC-IN2P3)

Slides FKPPL-Rhone-Alpes_YonnyCARDENAS.pdf

16:55 LIFEWATCH

Orateur: Dr Wouter Los (UVA, Netherlands)

Slides LifeWatch&LS_VRC_WouterLOS.pdf

17:05 eNMR EU project

Alexandre Bonvin, “WeNMR: A worldwide e-Infrastructure for NMR and structural biology”

Orateur: Dr Marco Verlato (INFN)

Slides WeNMR_MarcoVERLATO.pdf

17:15 BILS_Sweden

Orateur: Dr Erik Bongcam-Rudloff (SLU)

Slides Sweden_BILS_ErikBONGCAM-RUDLOFF.pdf

17:25 LIBI Italian project

Orateur: Guido Cuscela (INFN, Italy)

Slides LIBIexperience_GuidoCUSCELA.pdf

17:35 Discussion

18:30 → 20:00 HealthGrid General Assembly

The annual general assembly of the HealthGrid association will take place at the end of the first conference day. It is the opportunity to have an overview of the association activites to promote the use of grids in life sciences and healthcare.

mardi 29 juin

10:00 → 10:45 Applications: Keynote speech by Joan Dzenowagis

Président de session: Jonathan Silverstein (University of Chicago)

10:45 → 11:30 Applications: Oral contributions selected through call for papers

Président de session: Dr Jonathan Silverstein (University of Chicago)

10:45 Grid-based International Network for Flu Observation (g-INFO)

Orateur: M. Trung Tung Doan (HPC Center - Hanoi University of Technology)

Slides GridBasedInternationalNetworkForFluObservation_TrungTungDOAN.pdf

11:05 Grid based Evaluation of a Liver Segmentation Method for Contrast Enhanced Abdominal MRI

Orateur: Mlle Dagmar Krefting (Charité - Universitätsmedizin Berlin)

Slides GridBasedEvaluationOfaLiverSegmentationMethodForContrastEnhancedAbdominalMRI_DagmarKrefting.pdf

11:30 → 12:00 break

12:00 → 13:30 Applications: Oral contributions selected through call for papers

Président de session: Jonathan silverstein (university of Chicago)

12:00 Visualization, Analysis, and Design of COMBO-FISH Probes in the Grid-Based GLOBE 3D Genome Platform

Orateur: Dr Nick KEPPER (BioQuant, Universität Heidelberg)

Slides VisualizationAnalysisandDesignOfCOMBO-FISHProbesinTheGrid-BasedGLOBE3DGenomePlatform_NickKepper.pdf

12:20 Grid Heterogeneity in In-silico Experiments: An Exploration of Drug Screening Using DOCK on Cloud Environments

Orateur: Dr Wen-wai Yim (University of California, San Diego)

Slides GridHeterogeneityInIn-silicoExperimentsAnExplorationofDrugScreeningUsingDOCKonCloudEnvironments_WenWaiYIM.pdf

12:40 CHOIS: Enabling grid technologies for obesity surveillance and control

Orateur: Dr Arun DATTA (National University USA)

Slides CHOISEnablingGridTechnologiesForObesitySurveillanceAndControl_ArunDatta.pdf

13:00 Mean-Shift scale parameters optimization on the EGEE grid

Orateurs: Mlle Li Ting (CREATIS), Dr tristan glatard (university of lyon ; creatis-lrmn)

Slides MeanShiftScaleParametersOptimizationOnTheEGEEGrid_TingLi_TristanGlatard.pdf

13:30 → 15:00 Lunch break

15:00 → 16:30 Core technologies and data integration: Oral contributions selected through call for papers

Président de session: M. Yannick Legre (maat France - HealthGrid association)

15:00 Web service catalogue for Biomedical GRID infrastructure

Orateur: Max García (University of Málaga Spain)

Slides WebServiceCatalogueForBiomedicalGridInfrastructure_MaxGARCIA_.pdf

15:20 Phylogenetic Code in the Cloud – Can it Meet the Expectations?

Orateur: Dr Heinz Stockinger (Swiss Institute of Bioinformatics)

Slides PhylogeneticCodeIntheCloud_CanItMeetTheExpectations_HeinzSTOCKINGER.pdf

15:40 Integrating TRENCADIS Components in gLite to Share DICOM Medical Images and Structured Reports

Orateur: Dr Ignacio Blanquer (Universidad Politécnica de Valencia, Spain)

Slides IntegratingTRENCADIScomponentsINgliteToShareDICOMmedicalMAGESandSTRUCTUREDreports_IgnacioBLANQUER.pdf

16:00 Research Traceability using Provenance Services for Biomedical Analysis

Orateur: Dr Peter Bloodsworth (UWE, Bristol UK)

Slides HealthGrid.ppt

16:30 → 17:00 break

17:00 → 18:00 Core technologies and data integration: Oral contributions selected through call for papers

Président de session: M. Yannick Legre (Maat France - HealthGrid association)

17:00 Grid-wide neuroimaging data federation in the context of the NeuroLOG project

Orateur: M. Alban GAIGNARD (CNRS)

Slides NeuroLOG-DataManagement_AlbanGAIGNARD.pdf

17:20 Sentinel e-health network on grid: developments and challenges

Orateur: M. Paul De Vlieger (CNRS -IN2P3)

Slides SentinelNetwork_PaulDEVLIEGER.pdf

17:40 Presentation of the OutGrid project

Orateur: Chiara Barattieri (Fatebenefratelli)

Slides outGRID_ChiaraBARATTIERI.pdf

18:00 → 18:30 Short oral presentation of posters

This session is dedicated to a short 3 minutes presentation of each of the posters

Président de session: Dr vincent breton (CNRS-IN2P3)

19:30 → 23:00 Gala Dinner

A Gala Dinner will be held in the Restaurant RELAIS DES CHARTREUX located in SAULX LES CHARTREUX City.

A bus will pick up the dinner participants in front of the conference venue at 7 pm. For the return trip around 11pm, two bus stops: 1) RER B Station "Orsay-Ville" and 2) Montparnasse train station

Address:

RUE DE LA CERISAIE (RN 20)
F - 91160 SAULX LES CHARTREUX

mercredi 30 juin

10:00 → 10:45 Keynote speech by Modesto Orozco: the computational nature of the biological problem

Président de session: Dr Johan Montagnat (CNRS)

slides TheComputationalNatureOfTheBiologicalProblem_ModestoOROZCO.pdf

10:45 → 11:30 Accessibility and socio-economic aspects: Oral contributions selected through call for papers

Président de session: Dr Johan Montagnat (CNRS)

10:45 A Survey of Grid Knowledge and Grid Perception in Public Administrations

Orateur: M. Xin ZHOU (Geneva University Hospitals and University of Geneva)

Slides ASurveyOfGridKnowledgeAndGridPerceptionInThePublicSector_XinZHOU.pdf

11:05 Programming distributed medical applications with XWCH2

Orateur: M. Mohamed Ben Belgacem (University of Geneva)

Slides ProgrammingDistributedMedicalApplicationsWithXWCH2_MohamedBELGACEM.pdf

11:30 → 12:00 Coffee break

12:00 → 13:30 Accessibility and socio-economic aspects: Oral contributions selected through call for papers

12:00 Privacy aware access controls for medical data disclosure on European HealthGrids

Orateur: Dr Tony Solomonides (UWE, Bristol UK)

12:20 On Transferring the Grid Technology to the Biomedical Community

Orateur: M. Yassene Mohammed (University of Hannover/Germany and AMC/Netherland)

Slides OnTransferringTheGridTechnologyToTheBiomedicalCommunityTheGermanMediGRIDCase_YasseneMohammed.pdf

12:40 Décrypthon Grid - Grid Resources Dedicated to Neuromuscular Disorders

Orateur: Nicolas BARD (CNRS)

Slides DecryptonGrid_NicolasBARD.pdf

13:00 Hitting the Ground Running: Healthgrid deployment and adoption

Orateur: Dr Silvia Olabarriaga (AMC Netherlands)

Slides HG2010-HittingTheGroundRunning.pdf.pdf

13:30 → 15:00 Lunch break

15:00 → 16:30 Future of grids: Special session on General Purpose Graphical Processors

Présidents de session: Prof. David Hill (Blaise Pascal University), Prof. Vicente Hernandez (Universidad Politecnica de Valencia)

15:00 Using Graphics Processors to Accelerate Protein Docking Calculations

Orateur: David RITCHIE (INRIA Nancy - Grand Est France)

Slides UsingGraphicsProcessorstoAccelerateProteinDockingCalculations_DavidRitchie.pdf

15:20 CAPS sponsor talk

Orateur: M. Stephane Bihan (CAPS)

Slides HMPP_CAPS_StephaneBIHAN.pdf

15:40 Putting a Heart into a Box: GPGPU simulation of a Cardiac Model on the XBox 360

When they first hit the market the current “next” generation of games consoles are, pretty much by definition, the most powerful “bangs per buck” computing hardware one can get, especially in terms of their graphical computing power and advanced GPUs. However, little work has been published which actually uses this power to produce useful research results. One exception is my recent paper using the XBox 360 to carry out electro-cardio dynamics simulations, recently published in the Computational Biology and Chemistry*. This I shall discuss in the broader context of using games consoles as an alternative HPC resource. I shall also discuss the wider publicity generated by this paper, and highlight how games could be a very powerful tool in the Public Engagement with Science arena. * Implications of the Turing Completeness of Reaction-Diffusion Models, informed by GPGPU simulations on an XBox 360: Cardiac Arrhythmias, Re-entry and the Halting Problem, S.Scarle, Computational Biology and Chemistry 33 253 (2009) Video presentation at: http://tinyurl.com/cpv3pc

Orateur: Dr Simon Scarle (University of Warwick)

Slides GPGPUcardiac_HealthGrid2010_SimonScarle.pptx

Video FHN4_movie_HealthGrid2010_SimonSCARLE.mpg

15:45 → 16:30 Conference closure: Keynote speech by Fabrizio Gagliardi: Cloud computing for research

Président de session: Prof. Vicente Hernandez (universidad Politecnica de Valencia)

slides Cloud_Computing_for_Research_Fabrizio_Gagliardi.pdf

16:30 → 17:00 Conference closure: Conclusions

Président de session: Prof. vicente hernandez (universidad Politecnica de Valencia)

slides Cloud_Computing_for_Research_Fabrizio_Gagliardi.pdf

17:00 → 17:30 Coffee farewell